Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016186.1 Corchorus capsularis cultivar CVL-1 contig16207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36249

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1073--1108
18
1.9
19
88
5
56
33
0
8
58
1.28
5348--5427
40
2.0
40
97
0
151
26
2
22
48
1.63
5967--6022
26
2.2
26
87
12
80
46
0
0
53
1.00
8931--8969
2
20.0
2
89
5
62
51
2
0
46
1.14
11318--11360
14
3.0
15
83
10
54
65
0
0
34
0.93
15781--15843
31
2.0
31
81
6
74
44
1
9
44
1.46
15989--16035
22
2.3
19
75
25
51
27
17
10
44
1.81
16001--16054
22
2.5
22
87
0
72
35
11
12
40
1.79
16309--16351
16
2.8
16
85
3
61
39
37
13
9
1.78
16532--16557
2
13.0
2
100
0
52
50
0
0
50
1.00
17295--17398
16
6.6
16
82
8
133
42
36
15
5
1.71
17295--17398
32
3.3
31
87
2
154
42
36
15
5
1.71
17486--17679
22
8.9
22
75
9
112
34
15
8
41
1.78
17534--17702
22
7.7
22
74
7
148
31
16
8
42
1.79
17497--17679
44
4.2
45
80
6
164
34
14
9
42
1.77
17497--17702
66
3.2
66
76
10
178
33
15
9
42
1.78
17809--17929
22
5.5
22
77
3
109
33
14
9
42
1.78
17785--17929
44
3.3
44
72
9
134
33
13
9
42
1.77
20143--20191
23
2.2
21
85
7
62
6
8
28
57
1.52
20385--20417
3
11.0
3
100
0
66
66
0
0
33
0.92
23016--23087
35
2.1
35
94
0
126
40
18
6
34
1.77
24391--24545
78
2.0
78
85
0
211
48
12
5
33
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26854--26950
18
5.4
18
81
4
115
38
40
13
8
1.74
26854--26950
36
2.7
36
83
12
135
38
40
13
8
1.74
32375--32423
26
2.0
24
84
11
64
38
14
24
22
1.91
34514--35068
198
2.8
199
87
1
808
33
13
18
34
1.89

Tables:   1

The End!