Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016188.1 Corchorus capsularis cultivar CVL-1 contig16209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5879

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1030
199
5.3
196
80
8
1095
33
13
18
34
1.89
350--711
180
2.0
180
89
1
546
30
15
18
35
1.92
1187--1658
199
2.4
200
86
1
644
35
13
16
34
1.88
2170--2197
2
14.0
2
100
0
56
50
0
0
50
1.00
4577--4645
26
2.7
24
73
13
66
44
7
15
31
1.74
4862--4920
26
2.3
26
82
5
66
38
6
11
42
1.68
5452--5515
26
2.5
26
84
0
83
46
6
17
29
1.72
5733--5764
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!