Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001619.1 Corchorus capsularis cultivar CVL-1 contig01619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:979 original size:20 final size:21

Alignment explanation


    Indices: 954--992  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        944 CTTATTTATT

                                 
        954 TATATTC-GAATTACTTTTAA
          1 TATATTCAGAATTACTTTTAA

                               
        974 TATATTCAGAATTACTTTT
          1 TATATTCAGAATTACTTTT

        993 TATCGCATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51


Consensus pattern (21 bp):   
TATATTCAGAATTACTTTTAA

Done.