Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016190.1 Corchorus capsularis cultivar CVL-1 contig16211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30471

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1101--1177
26
3.0
26
70
11
68
49
7
11
31
1.68
1778--1881
52
2.1
49
90
5
163
29
3
7
58
1.44
1938--1963
2
13.0
2
100
0
52
50
0
0
50
1.00
2009--2052
22
2.0
22
86
8
63
38
9
4
47
1.56
2071--2236
22
7.5
22
66
12
63
33
12
11
42
1.79
2230--2282
22
2.4
22
83
3
61
39
15
13
32
1.85
2323--2563
22
11.1
22
72
10
95
35
16
8
40
1.78
2375--2459
23
3.7
23
85
1
109
37
15
7
40
1.74
2358--2459
45
2.3
46
86
3
136
37
15
8
38
1.79
2601--2652
19
2.7
20
88
11
81
26
11
11
50
1.73
2761--2925
22
7.6
22
69
5
86
36
12
8
42
1.74
2734--2926
44
4.4
44
75
3
158
35
12
8
43
1.74
2871--3065
22
8.7
22
68
20
77
35
14
9
40
1.78
3026--3076
22
2.3
22
82
0
66
41
19
7
31
1.80
3229--3336
22
4.9
22
79
6
103
37
16
10
35
1.83
11257--11295
19
2.1
19
100
0
78
51
15
10
23
1.73
17473--17608
31
4.5
31
71
10
127
27
17
18
36
1.93
17510--17623
60
1.9
60
94
0
201
30
17
16
35
1.92
17510--17644
60
2.2
60
89
2
200
30
17
15
37
1.91
17510--17668
60
2.7
60
84
7
198
30
16
15
36
1.91
18667--18737
14
5.1
14
71
10
56
45
5
8
40
1.58
18656--18738
41
2.0
41
100
0
166
40
4
7
46
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18660--18748
41
2.2
41
93
0
151
42
4
7
44
1.53
19051--19088
11
3.5
11
89
10
51
39
0
2
57
1.12
20234--20268
2
17.5
2
100
0
70
51
0
0
48
1.00
23249--23310
33
1.9
32
93
3
106
51
6
16
25
1.68
23372--23493
60
2.0
60
98
0
235
52
16
11
19
1.74
30094--30172
39
2.0
39
87
0
113
46
10
11
31
1.73

Tables:   1

The End!