genome.fa.s16196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016196.1 Corchorus capsularis cultivar CVL-1 contig16217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51928

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294--398	33	3.2	32	79	5	120	25	8	20	45	1.79
385--466	33	2.5	33	91	0	137	29	8	18	43	1.79
5632--5737	33	3.2	33	82	2	115	42	21	10	25	1.84
7556--7597	2	21.0	2	95	0	75	2	0	47	50	1.14
9674--9771	51	1.9	51	89	0	151	35	12	14	37	1.83
9725--10251	201	2.6	200	83	3	684	32	18	17	31	1.94
11116--11237	26	4.7	26	73	11	115	18	13	38	29	1.89
11116--11237	53	2.3	52	85	4	165	18	13	38	29	1.89
11278--11322	15	3.0	15	93	0	72	13	26	46	13	1.80
11407--11439	15	2.2	15	94	0	57	12	24	51	12	1.73
11839--11965	61	2.1	60	88	1	182	23	20	25	29	1.99
11981--12034	23	2.3	23	87	6	74	11	3	7	77	1.09
12147--12365	38	5.8	37	86	2	303	17	22	30	28	1.97
12147--12365	75	2.9	75	88	1	323	17	22	30	28	1.97
12150--12365	113	1.9	112	88	2	326	18	23	30	28	1.97
12553--12830	44	6.4	44	94	0	454	14	15	25	44	1.85
14194--14545	44	8.1	44	81	2	381	15	15	24	45	1.84
15917--16429	128	4.0	128	91	3	778	14	28	26	30	1.95
15917--16429	260	2.0	257	89	2	787	14	28	26	30	1.95
20128--20247	26	4.6	26	78	12	120	17	15	37	30	1.90
20128--20247	53	2.3	52	89	4	179	17	15	37	30	1.90
20280--20316	15	2.4	16	86	13	60	16	24	43	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20604--20698	31	3.1	31	85	0	136	45	15	10	28	1.80
22997--23119	61	2.0	61	98	0	237	34	22	3	39	1.71
23132--23212	40	2.0	40	100	0	162	23	29	7	39	1.82
26416--26484	33	2.1	33	84	10	88	10	31	39	18	1.84
26535--26568	14	2.4	14	85	0	50	29	8	5	55	1.54
32145--32573	214	2.0	214	99	0	849	22	22	17	37	1.94
35814--35888	37	2.0	37	94	0	132	36	22	8	33	1.84
35892--35917	2	13.0	2	100	0	52	0	50	0	50	1.00
41054--41092	21	1.9	20	94	5	69	20	10	23	46	1.81
41057--41101	21	2.2	20	88	7	65	22	8	26	42	1.83
41159--41198	16	2.5	16	88	8	55	85	10	5	0	0.75
43756--43842	43	2.0	42	93	2	147	50	16	16	17	1.78
43767--43851	43	2.0	42	88	6	129	51	12	15	20	1.75
44327--44384	30	1.9	30	85	0	80	31	20	10	37	1.86

Tables:   1

The End!