Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016197.1 Corchorus capsularis cultivar CVL-1 contig16218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52328

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6618--6666
25
2.0
25
100
0
98
34
20
32
12
1.90
7530--7578
25
2.0
25
100
0
98
34
20
32
12
1.90
15171--15210
20
2.0
20
90
9
64
70
7
10
12
1.35
15892--15921
13
2.3
13
94
0
51
16
13
0
70
1.18
15891--15927
7
5.4
7
90
6
58
16
13
0
70
1.17
17356--17398
22
2.0
22
90
0
68
60
4
9
25
1.47
19313--19341
11
2.6
11
100
0
58
82
0
10
6
0.83
27860--28034
73
2.4
73
85
3
235
32
21
18
27
1.97
30330--30382
25
2.1
25
96
0
97
41
15
20
22
1.89
35928--36017
45
2.0
45
91
0
144
24
17
22
35
1.95
39678--39702
6
4.2
6
100
0
50
48
0
16
36
1.46
43085--43130
24
1.9
24
100
0
92
21
26
17
34
1.95

Tables:   1

The End!