Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016199.1 Corchorus capsularis cultivar CVL-1 contig16220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23500

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3934--3966
14
2.4
14
94
0
57
48
3
18
30
1.63
3941--3986
20
2.3
20
85
7
58
47
6
17
28
1.72
3980--4049
22
3.3
21
75
9
63
37
5
24
32
1.79
4042--4139
22
4.4
22
75
2
79
41
3
24
30
1.70
4026--4142
16
7.5
16
70
16
68
42
2
23
30
1.68
4291--4453
8
22.3
7
64
23
52
46
4
21
28
1.70
4289--4514
22
10.5
21
69
21
105
44
4
22
29
1.72
4324--4546
36
6.0
36
77
10
200
43
4
22
30
1.72
4360--4549
8
25.6
8
67
22
55
44
4
22
28
1.72
4630--4794
8
21.4
8
64
17
55
47
3
21
27
1.67
4626--4700
24
3.1
24
82
1
87
46
4
22
26
1.69
4737--4792
16
3.5
16
82
0
67
48
3
19
28
1.66
4737--4845
24
4.4
24
73
13
76
45
4
21
28
1.71
6119--6148
15
1.9
16
93
6
53
0
16
0
83
0.65
6493--6527
13
2.7
13
90
0
52
42
8
11
37
1.72
6505--6569
32
2.0
33
96
3
123
36
15
7
40
1.76
11996--12035
2
20.5
2
87
5
55
45
2
2
50
1.28
14686--14725
21
1.9
21
85
10
55
42
17
17
22
1.89
14711--14750
21
2.0
21
85
5
55
42
17
17
22
1.89
17744--18280
155
3.5
154
79
8
497
30
15
18
35
1.92
21226--21305
38
2.1
38
97
0
151
52
7
12
27
1.66
21981--22018
15
2.5
16
83
12
53
36
31
13
18
1.89

Tables:   1

The End!