Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016200.1 Corchorus capsularis cultivar CVL-1 contig16221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2655
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39


Found at i:583 original size:20 final size:20

Alignment explanation


    Indices: 545--582  Score: 69
    Period size: 19  Copynumber: 1.9  Consensus size: 20

        535 GAATTTATAA

                                
        545 ATAACCTTATAATTGTTTTG
          1 ATAACCTTATAATTGTTTTG

                               
        565 ATAACC-TATAATTGTTTT
          1 ATAACCTTATAATTGTTTT

        583 TTAGTAATCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   12  0.67
  20    6  0.33

ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50


Consensus pattern (20 bp):   
ATAACCTTATAATTGTTTTG
Done.