Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016201.1 Corchorus capsularis cultivar CVL-1 contig16222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51292

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2001--2125
22
5.7
21
70
19
78
42
16
16
24
1.88
2010--2236
44
5.2
44
74
13
125
39
14
15
30
1.88
2539--2583
22
2.0
23
83
12
58
71
11
4
13
1.29
5127--5239
55
2.0
56
91
5
185
61
15
4
17
1.49
6107--6148
3
14.0
3
100
0
84
66
0
0
33
0.92
8021--8250
22
10.5
21
74
11
162
37
9
15
38
1.79
8018--8246
68
3.5
66
80
7
263
36
8
16
38
1.79
8315--8378
22
3.0
21
79
9
58
34
10
20
34
1.88
8341--8626
22
12.8
22
67
14
106
39
11
15
33
1.83
8340--9041
44
16.4
44
66
20
156
39
10
15
34
1.82
8499--8643
66
2.2
67
82
3
170
40
10
14
35
1.80
8505--8671
88
1.9
88
85
2
228
40
11
13
34
1.82
8480--8646
22
7.6
22
72
11
112
40
10
13
35
1.79
8480--8643
66
2.5
65
77
11
165
40
9
14
35
1.78
8755--9199
22
20.5
22
68
9
184
38
9
15
36
1.80
9167--9227
22
2.8
22
80
11
63
49
3
14
32
1.60
21221--21269
24
2.0
24
92
0
80
30
22
10
36
1.87
21909--21985
27
2.6
30
82
8
79
31
15
9
44
1.78
22449--22571
44
2.8
44
81
4
149
42
13
8
34
1.76
22429--22571
22
6.5
22
78
4
101
45
13
8
32
1.74
22475--22622
44
3.4
43
79
7
127
43
11
12
32
1.78
22453--22618
22
7.6
21
74
13
113
43
12
10
33
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22449--22594
66
2.2
66
83
9
174
41
12
10
35
1.77
22650--22719
22
3.1
22
85
6
79
37
7
24
31
1.82
22758--22993
22
10.7
22
72
6
145
33
11
15
39
1.83
23713--23747
2
17.5
2
93
0
61
45
0
2
51
1.16
23797--23828
2
16.0
2
100
0
64
0
0
50
50
1.00
25246--25756
171
3.0
172
97
0
961
31
20
17
30
1.96
28366--28390
13
1.9
13
100
0
50
44
0
0
56
0.99
28400--28427
10
2.8
10
100
0
56
60
0
0
39
0.97
32133--32165
2
16.5
2
100
0
66
48
0
0
51
1.00
35990--36029
21
2.0
20
85
5
53
75
5
0
20
0.99
36038--36091
25
2.2
25
93
0
90
38
7
18
35
1.79
36590--36615
10
2.6
10
100
0
52
11
0
15
73
1.11
39944--39990
22
2.1
22
84
7
60
29
25
34
10
1.90
47400--47456
28
2.0
28
89
0
87
24
17
15
42
1.88

Tables:   1

The End!