Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016205.1 Corchorus capsularis cultivar CVL-1 contig16226, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39162

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2944--2982
18
2.2
18
95
0
69
46
2
0
51
1.14
3312--3354
4
11.2
4
82
9
54
55
0
18
25
1.42
3306--3354
22
2.2
22
92
0
80
55
0
18
26
1.43
5210--5243
16
2.2
15
94
5
59
76
0
23
0
0.79
6292--6334
12
3.6
12
82
17
54
25
0
18
55
1.42
8263--8334
29
2.4
29
81
2
81
40
26
11
22
1.87
10712--10816
33
3.2
33
81
0
120
26
9
19
44
1.81
10765--10851
33
2.6
33
82
12
99
29
9
20
40
1.84
10842--10915
33
2.2
33
95
0
130
28
12
12
47
1.77
15553--15649
22
4.5
22
94
1
169
9
43
37
10
1.71
20161--20185
2
12.5
2
100
0
50
52
0
0
48
1.00
21491--21515
13
1.9
13
100
0
50
56
8
12
24
1.62
22945--22994
25
2.0
25
88
4
73
40
8
0
52
1.31
22984--23046
29
2.2
29
97
2
119
33
19
0
47
1.49
24076--24116
1
41.0
1
100
0
82
0
0
0
100
0.00
24254--24290
19
1.9
19
94
0
65
48
18
24
8
1.75
35930--35977
21
2.3
22
78
10
55
12
41
29
16
1.85
36828--36877
19
2.6
19
100
0
100
18
20
6
56
1.62
37592--37627
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!