Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016207.1 Corchorus capsularis cultivar CVL-1 contig16228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8554

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1690--1923
118
2.0
119
89
1
362
36
14
14
34
1.87
3576--3623
22
2.2
22
84
0
60
29
4
22
43
1.72
3730--4306
22
26.6
22
68
10
185
35
15
10
39
1.81
3998--4099
23
4.5
23
82
1
100
39
14
8
37
1.78
4256--4306
19
2.6
20
90
6
86
25
17
11
45
1.83
4500--4602
22
4.6
22
76
10
102
37
10
10
40
1.75
4502--4590
46
2.0
43
84
6
115
38
12
7
41
1.72
4642--4696
22
2.5
23
82
11
71
38
16
5
40
1.72
4712--4772
24
2.7
23
78
9
63
36
16
9
37
1.82
4815--4969
22
7.0
22
78
7
100
38
18
10
33
1.84
5135--5177
19
2.2
20
84
16
54
62
0
6
30
1.21
5392--5563
22
7.9
22
67
8
82
34
12
10
42
1.77
6040--6119
23
3.5
23
82
1
90
40
16
7
36
1.77
5770--6259
22
22.7
21
67
14
110
35
14
10
39
1.80
6308--6355
25
1.9
25
83
8
62
64
10
8
16
1.48
6488--6548
31
2.0
29
84
6
77
47
4
18
29
1.69

Tables:   1

The End!