Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016211.1 Corchorus capsularis cultivar CVL-1 contig16232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60322

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2614--2662
21
2.3
21
85
0
62
10
32
28
28
1.90
6140--6361
113
2.0
114
87
2
322
31
18
25
24
1.97
6333--6392
31
1.9
31
93
0
102
31
23
28
16
1.96
6364--6697
113
3.0
113
87
8
436
30
19
27
21
1.98
9423--9470
25
1.9
25
95
0
87
41
25
6
27
1.79
10206--10284
33
2.4
33
93
0
131
30
21
22
25
1.99
14321--14383
4
17.0
4
78
21
59
44
0
0
55
0.99
14322--14380
19
3.2
19
95
4
104
44
0
0
55
0.99
14321--14383
7
8.6
7
77
19
58
44
0
0
55
0.99
25682--25773
35
2.6
35
84
0
112
26
28
14
31
1.94
26352--26726
82
4.5
84
84
5
438
37
25
12
24
1.90
26365--26725
41
8.6
41
74
11
243
37
25
12
24
1.90
27642--27680
20
2.0
20
100
0
78
33
15
30
20
1.94
30950--30975
6
4.3
6
100
0
52
15
0
0
84
0.62
33561--33593
17
2.1
17
88
11
52
15
9
12
63
1.51
40219--40263
24
2.0
23
87
12
67
22
13
15
48
1.79
43128--43166
15
2.6
15
88
8
53
30
2
2
64
1.21
48642--48668
6
4.5
6
100
0
54
14
0
18
66
1.25
55538--55573
18
2.0
18
94
0
63
41
16
30
11
1.83
56594--56903
7
43.3
7
64
21
58
21
20
4
53
1.64
56594--56806
15
14.3
15
65
20
74
20
20
4
53
1.63
56585--56898
35
8.4
35
78
11
252
21
20
5
52
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56737--56798
22
3.0
20
75
11
61
24
19
1
54
1.53
56793--56933
21
6.6
21
86
8
178
21
21
4
51
1.65
56942--56990
14
3.5
14
89
10
73
20
20
6
53
1.67
56587--57199
35
17.3
34
73
16
141
21
21
5
52
1.66
56801--56990
21
9.0
21
76
10
147
21
22
4
51
1.66
56602--57402
387
2.1
373
94
3
1388
20
21
5
52
1.66
57180--57320
21
6.6
21
83
8
160
22
22
4
50
1.66
57174--57302
22
6.0
22
83
8
140
23
20
4
51
1.66
57330--57426
14
7.2
13
72
14
72
19
17
7
55
1.65
57329--57465
67
2.0
67
97
0
256
18
19
6
54
1.65
57444--57539
7
13.7
7
69
3
50
17
20
5
56
1.60
57478--57537
28
2.1
29
87
3
86
16
20
5
58
1.56
57675--57755
32
2.5
32
86
4
101
20
23
2
53
1.58
57725--57821
48
2.0
48
87
0
140
22
17
8
51
1.72
59307--59363
30
1.9
29
89
3
87
31
42
3
22
1.71

Tables:   1

The End!