Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016214.1 Corchorus capsularis cultivar CVL-1 contig16235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11728

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2650--3155
90
5.6
90
90
1
730
29
26
17
26
1.98
3295--3469
35
5.0
35
88
0
233
29
26
16
28
1.96
3500--3590
46
2.0
46
84
0
119
27
23
19
29
1.98
3471--3747
110
2.7
104
81
7
305
32
22
14
30
1.94
3546--3750
55
3.7
55
92
0
340
32
20
15
31
1.94
5162--5203
16
2.5
17
80
3
50
7
28
0
64
1.20
6153--6188
15
2.5
15
90
4
56
38
13
8
38
1.75
7443--7497
27
2.0
27
92
0
92
32
12
27
27
1.93
8232--8268
15
2.4
16
90
4
58
64
8
0
27
1.21
9327--9362
19
1.9
18
88
5
54
33
22
2
41
1.68
10419--10935
43
11.8
43
70
25
315
37
19
6
36
1.79
10432--10479
24
1.9
25
83
8
62
43
18
2
35
1.62
10496--10771
56
4.9
56
72
12
278
37
19
6
36
1.78
10552--10715
35
4.5
35
76
11
175
37
20
7
34
1.82
10450--10836
169
2.3
169
94
0
675
37
19
6
36
1.79
10721--10963
35
7.1
35
72
17
197
37
19
7
36
1.80
10816--10861
21
2.2
21
84
0
56
39
15
2
43
1.59
10904--10962
17
3.3
19
67
13
61
37
16
10
35
1.83
10974--11157
55
3.5
54
87
10
274
28
16
6
48
1.71
10988--11155
48
3.4
49
84
13
236
27
17
6
48
1.71

Tables:   1

The End!