genome.fa.s16217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016217.1 Corchorus capsularis cultivar CVL-1 contig16238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142413

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3924--3990	33	2.0	33	94	0	116	25	38	25	10	1.87
3916--4006	33	2.9	31	77	15	107	24	38	28	8	1.85
5358--5429	21	3.4	21	90	0	117	11	37	36	15	1.83
5464--5505	21	2.0	21	90	0	66	11	35	30	21	1.90
11799--12247	32	13.5	32	81	6	457	25	28	28	16	1.97
12186--12242	19	3.3	19	68	27	63	28	26	29	15	1.96
12507--12721	48	4.7	48	75	13	173	34	22	22	20	1.96
18644--18705	21	2.7	24	75	14	76	61	1	33	3	1.22
23958--24198	133	1.8	133	95	1	432	29	17	12	40	1.86
31227--31267	21	2.0	21	95	0	73	41	9	34	14	1.79
34791--34963	21	8.4	20	73	18	126	22	20	5	52	1.66
34812--34943	42	3.3	41	80	16	159	24	19	5	50	1.68
34854--34930	35	2.1	37	90	4	122	24	18	5	51	1.66
34888--34979	22	4.1	22	84	6	123	20	18	4	56	1.58
34951--35159	27	7.8	26	80	13	185	20	19	2	56	1.54
34910--35160	53	4.8	54	79	14	194	20	19	3	56	1.56
35036--35142	55	1.9	56	92	5	182	24	19	3	52	1.62
35144--35188	21	2.1	21	83	0	54	26	22	0	51	1.49
35144--35416	36	7.6	36	89	1	381	20	22	2	54	1.56
35440--35528	40	2.2	40	84	7	110	21	24	4	49	1.68
35511--35783	32	8.1	32	76	14	221	19	25	3	51	1.62
35471--35606	72	1.9	72	87	0	200	19	26	2	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35471--35624	72	2.1	72	84	2	193	19	25	3	51	1.62
35627--35699	36	2.0	36	86	0	101	20	19	4	56	1.58
35705--35758	17	3.3	17	72	27	62	18	29	3	48	1.65
35663--35788	65	1.9	65	87	3	182	19	29	2	49	1.61
39228--39298	25	2.9	24	91	2	106	38	26	16	18	1.92
39650--39785	66	2.1	64	88	2	209	33	22	21	22	1.97
42883--43053	69	2.5	67	84	7	229	26	26	15	31	1.96
43108--43167	29	2.1	29	81	6	68	13	33	13	40	1.83
49587--49616	2	15.0	2	100	0	60	0	0	50	50	1.00
51363--51400	18	2.1	18	95	0	67	5	31	18	44	1.72
54035--54066	6	5.5	6	96	3	57	31	0	12	56	1.37
54578--54819	62	3.9	62	82	2	268	23	22	15	38	1.92
54578--54874	62	4.8	62	79	4	260	23	23	15	37	1.93
65885--66518	342	1.9	342	98	0	1223	42	16	20	20	1.89
69999--70030	15	2.1	15	94	0	55	50	12	21	15	1.77
79198--79300	31	3.4	31	80	10	90	30	18	16	34	1.93
79229--79300	30	2.4	31	85	2	92	27	19	18	34	1.95
79615--79657	21	2.0	21	90	0	68	53	23	11	11	1.69
80588--80653	30	2.2	31	86	2	89	42	15	15	27	1.86
83576--83615	19	2.1	19	85	0	53	50	10	7	32	1.64
83614--83648	18	1.9	18	94	0	61	40	20	8	31	1.82
86704--87359	58	11.4	58	88	3	959	28	24	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87322--87403	36	2.3	35	89	8	130	32	21	8	36	1.84
89309--89441	64	2.1	64	83	5	162	13	15	11	60	1.60
91898--91939	22	1.9	22	85	9	59	57	4	21	16	1.58
98549--98721	21	8.4	20	74	18	135	22	20	5	51	1.67
98549--98737	42	4.6	43	77	15	184	21	20	4	52	1.64
98612--98688	35	2.1	37	90	4	122	24	18	5	51	1.66
98646--98737	22	4.1	22	84	6	123	20	18	4	56	1.58
98668--98845	53	3.5	53	78	16	175	19	18	3	58	1.52
98726--98919	28	7.1	27	78	13	175	20	19	2	57	1.52
98904--98948	21	2.1	21	83	0	54	26	22	0	51	1.49
98904--99176	36	7.6	36	87	1	363	20	22	2	54	1.56
99200--99288	40	2.2	40	82	7	101	21	23	5	49	1.70
99271--99543	32	8.2	32	77	13	248	19	24	4	52	1.63
99232--99367	72	1.9	73	84	4	186	20	25	2	52	1.58
99329--99540	65	3.3	65	81	7	236	19	24	4	51	1.66
99453--99516	17	3.9	16	75	19	60	20	28	3	48	1.64
99329--99552	97	2.3	98	82	8	251	18	24	4	52	1.64
103011--103083	25	2.9	25	91	2	110	36	26	16	20	1.93
103936--104048	39	2.9	38	81	12	131	18	10	27	43	1.83
105763--105802	20	2.0	20	90	0	62	15	30	20	35	1.93
106795--106853	23	2.6	23	83	0	73	62	10	8	18	1.51
106832--106868	19	1.9	19	94	0	65	59	10	8	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109526--109561	12	3.0	12	91	0	54	52	8	11	27	1.65
112861--112894	14	2.4	14	90	0	50	17	0	8	73	1.08
116283--116319	19	2.0	18	89	5	56	40	8	21	29	1.82
122005--122061	24	2.4	24	94	5	98	17	19	14	49	1.80
122221--122246	2	13.0	2	100	0	52	0	0	50	50	1.00
128471--128544	32	2.3	32	92	0	121	16	12	36	35	1.86
128702--128779	16	4.9	16	79	6	95	3	11	33	51	1.56
130351--130386	16	2.2	16	90	0	54	8	25	22	44	1.80
138681--138712	16	2.0	16	93	0	55	53	21	6	18	1.67
138800--138872	25	2.9	25	89	4	103	16	10	46	26	1.80
141506--141552	21	2.2	21	81	7	60	12	23	46	17	1.82
142021--142099	27	2.9	27	84	1	95	13	17	25	43	1.86

Tables:   1

The End!