Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016219.1 Corchorus capsularis cultivar CVL-1 contig16240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6628

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531--760
39
6.0
38
86
3
300
50
5
14
29
1.66
531--755
77
2.9
77
91
2
346
50
5
14
29
1.65
531--798
116
2.3
114
82
7
322
51
6
14
27
1.67
1135--1236
14
7.3
14
72
18
79
51
5
22
19
1.68
1232--1401
42
4.0
42
77
11
159
45
4
24
25
1.71
1297--1347
25
2.0
25
92
0
84
54
0
19
25
1.44
1331--1366
18
2.0
18
88
0
54
52
0
16
30
1.44
1324--1366
18
2.5
17
77
7
50
53
0
18
27
1.45
1372--1453
15
5.4
16
70
15
57
52
3
20
23
1.62
1432--1462
15
2.1
15
93
0
53
64
0
16
19
1.29
6491--6524
16
2.1
16
100
0
68
11
23
17
47
1.81

Tables:   1

The End!