Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016223.1 Corchorus capsularis cultivar CVL-1 contig16244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72296

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10087--10141
27
2.0
27
96
0
101
21
9
29
40
1.84
10156--10236
42
1.9
42
89
0
126
28
38
16
17
1.91
10612--10650
19
2.1
19
100
0
78
64
10
5
20
1.44
18162--18194
2
16.5
2
100
0
66
48
0
0
51
1.00
24495--24558
30
2.1
30
85
5
85
23
40
26
9
1.85
25834--25896
28
2.2
28
97
0
117
39
15
20
23
1.91
26930--27163
75
3.0
75
78
16
271
43
5
15
34
1.72
32322--32398
37
2.1
38
82
2
93
37
12
14
35
1.84
32456--32498
10
4.4
10
85
2
61
88
0
11
0
0.52
32463--32500
19
1.9
19
94
5
67
84
0
15
0
0.63
35411--36463
35
29.9
35
87
4
1455
30
15
21
33
1.94
37696--37927
86
2.7
86
91
3
360
43
6
16
33
1.73
39246--39274
12
2.3
13
94
5
51
13
0
0
86
0.58
56082--56123
21
2.0
21
100
0
66
23
9
23
42
1.83
71255--71338
31
2.7
31
98
0
159
22
22
26
28
1.99
72226--72262
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!