Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016226.1 Corchorus capsularis cultivar CVL-1 contig16247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40804

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4440--4579
1
140.0
1
74
0
100
85
8
5
0
0.73
4440--4559
8
15.5
8
78
14
119
86
10
3
0
0.67
4440--4551
44
2.4
45
84
10
138
86
9
3
0
0.68
4452--4586
70
1.9
72
83
8
179
84
8
7
0
0.78
4478--4578
51
2.0
53
92
5
172
85
6
7
0
0.75
5510--5806
35
8.5
35
90
1
418
30
19
17
31
1.95
5769--5936
54
3.1
54
87
3
223
24
18
23
33
1.97
10079--10138
18
3.3
18
63
9
50
40
18
8
33
1.80
10060--10174
36
3.2
36
93
0
194
40
17
9
32
1.82
10216--10267
27
1.9
27
88
0
77
48
21
15
15
1.81
28428--28487
30
2.0
30
93
0
102
18
25
21
35
1.96
30059--30184
32
3.9
32
84
8
159
36
21
20
21
1.95
34195--34248
24
2.2
24
93
0
90
18
7
24
50
1.72
34319--35165
426
2.0
424
94
0
1487
31
8
24
34
1.86
40639--40673
2
17.5
2
100
0
70
51
0
48
0
1.00

Tables:   1

The End!