Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016227.1 Corchorus capsularis cultivar CVL-1 contig16248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29971

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1207--1265
29
2.0
29
96
0
109
35
28
6
28
1.83
6809--6998
94
2.0
94
98
0
371
36
17
22
23
1.95
12764--12845
32
2.6
32
80
3
96
23
30
17
29
1.97
15166--15253
35
2.5
35
83
0
113
22
29
20
27
1.99
15995--16158
41
4.0
41
81
0
193
38
28
10
23
1.87
16000--16208
83
2.6
82
86
3
271
39
26
11
22
1.88
23664--23740
26
3.0
26
88
0
118
51
6
2
38
1.41
27224--27268
13
3.5
13
90
3
74
55
8
13
22
1.65
27224--27276
25
2.1
25
89
6
81
58
9
11
20
1.60

Tables:   1

The End!