Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016228.1 Corchorus capsularis cultivar CVL-1 contig16249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60024

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
962--1032
30
2.4
29
88
6
108
47
5
11
35
1.63
1320--1358
6
6.5
6
100
0
78
53
15
0
30
1.42
1355--1399
13
3.6
12
79
8
54
57
8
13
20
1.62
1355--1407
25
2.1
25
89
6
81
60
9
11
18
1.57
13484--13539
21
2.6
21
85
2
67
21
44
16
17
1.86
20592--20624
16
2.1
16
94
0
57
75
3
0
21
0.93
21553--21586
15
2.3
15
90
10
52
26
5
5
61
1.42
25450--25479
1
30.0
1
100
0
60
100
0
0
0
0.00
25727--25757
16
1.9
16
100
0
62
51
22
25
0
1.48
25807--25838
16
2.0
16
100
0
64
50
25
18
6
1.70
25846--25932
45
1.9
45
90
0
138
43
24
14
17
1.86
26178--27149
399
2.4
399
94
0
1676
24
19
31
25
1.98
30485--30591
18
5.4
18
68
27
74
13
7
22
57
1.61
30475--30599
41
3.0
41
100
0
250
14
7
21
56
1.62
34876--34908
2
16.5
2
100
0
66
51
0
0
48
1.00
35050--35270
109
2.0
109
92
0
370
25
21
22
29
1.99
38251--38280
3
10.0
3
100
0
60
66
33
0
0
0.92
38314--38494
68
2.7
66
81
12
201
44
3
27
23
1.71
38893--38992
31
3.3
31
77
5
114
32
20
13
35
1.90
40950--41393
237
1.9
237
92
0
753
40
14
15
29
1.86
47248--47358
53
2.0
55
93
5
190
48
22
6
22
1.73
47750--48730
437
2.2
435
83
3
1153
27
13
16
42
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55793--55904
32
3.5
32
79
3
118
27
24
23
25
2.00
56552--56617
11
5.3
12
78
18
57
0
39
3
57
1.14
57054--57085
2
16.0
2
100
0
64
50
0
0
50
1.00
58539--58653
27
4.2
28
79
10
132
22
38
19
20
1.94

Tables:   1

The End!