Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016233.1 Corchorus capsularis cultivar CVL-1 contig16254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39488

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166--199
2
17.5
2
93
6
61
50
0
50
0
1.00
5786--6146
156
2.3
154
77
8
356
30
14
20
34
1.93
7781--8065
147
1.9
146
83
2
365
25
23
30
20
1.99
15529--15568
21
2.0
21
85
5
55
42
17
17
22
1.89
17746--18615
431
2.0
433
90
3
1390
33
16
20
29
1.95
18938--19295
156
2.3
155
80
6
402
30
15
19
34
1.93
20917--21200
120
2.4
120
86
1
372
27
23
25
23
2.00
24074--24112
20
1.9
21
84
5
53
41
17
17
23
1.91
25225--25637
183
2.3
184
79
9
424
30
18
16
35
1.93
27644--27682
20
2.0
20
94
0
69
28
30
17
23
1.97
30613--30670
21
2.8
21
81
2
64
29
32
29
8
1.87
33482--33530
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!