Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016235.1 Corchorus capsularis cultivar CVL-1 contig16256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89541

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572--624
26
2.1
27
86
10
76
54
1
37
5
1.35
2346--2392
19
2.4
19
86
10
60
38
2
21
38
1.65
8843--9176
49
6.8
49
88
0
499
22
32
14
30
1.93
8855--9176
146
2.2
147
92
3
533
22
33
13
30
1.93
11872--11903
15
2.1
15
94
0
55
15
21
12
50
1.77
19766--19791
7
3.7
7
100
0
52
15
0
53
30
1.42
25095--25157
30
2.1
30
94
5
110
26
17
36
19
1.94
25103--25276
85
2.1
85
96
1
323
31
16
33
18
1.93
27650--27750
41
2.5
41
78
3
114
22
15
16
44
1.86
27969--28002
18
1.9
17
88
5
50
47
0
11
41
1.40
32273--32727
66
6.8
63
78
11
204
41
15
20
23
1.90
32404--32727
68
4.9
66
83
7
225
41
16
20
22
1.90
32312--32735
67
6.4
65
81
8
349
42
15
20
21
1.89
40994--41018
12
2.1
12
100
0
50
0
16
32
52
1.44
46471--46563
33
2.8
32
80
3
87
31
16
20
32
1.94
47948--47994
24
2.0
24
91
0
76
27
23
27
21
1.99
49711--49757
7
6.4
7
77
18
51
2
17
0
80
0.80
51331--51604
28
9.8
28
83
3
320
20
20
33
26
1.97
51733--52182
149
3.0
148
87
1
603
20
21
25
32
1.97
54607--54870
131
2.0
131
86
5
372
36
12
2
48
1.54
75450--75494
21
2.1
21
91
0
72
26
22
24
26
2.00

Tables:   1

The End!