genome.fa.s16240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016240.1 Corchorus capsularis cultivar CVL-1 contig16261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23410

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10--110	49	2.1	49	90	0	157	19	17	25	36	1.94
190--259	34	2.1	34	84	10	90	20	15	24	40	1.91
424--656	64	3.7	63	76	7	197	24	18	15	41	1.89
606--771	57	2.9	58	80	1	192	25	21	15	37	1.92
606--761	58	2.7	57	81	2	195	25	21	14	39	1.91
6679--6807	48	2.7	48	92	0	204	45	5	17	31	1.71
6832--6925	19	4.9	18	71	18	66	44	8	14	31	1.76
6818--7482	58	11.7	58	83	7	548	46	5	18	29	1.73
6821--7166	115	3.0	116	90	0	541	45	7	17	29	1.75
6948--6990	19	2.2	21	84	12	56	46	4	16	32	1.67
6833--7208	173	2.2	174	88	1	558	44	6	18	29	1.75
7198--7287	28	3.2	28	67	14	87	46	2	24	26	1.64
6687--7548	55	15.5	55	82	7	567	46	5	18	29	1.72
13258--13381	16	7.9	16	80	7	132	9	20	36	33	1.86
13296--13395	7	12.9	7	72	19	74	8	24	37	31	1.84
13258--13395	7	17.5	8	67	23	62	9	21	36	31	1.86
13258--13381	32	4.0	31	82	7	153	9	20	36	33	1.86
13841--13888	21	2.3	21	88	0	78	56	6	8	29	1.53
14092--14192	53	1.9	52	88	8	150	38	26	17	16	1.92
14144--14242	31	3.2	31	83	0	117	36	28	18	17	1.93
14523--14610	16	5.5	16	78	5	97	11	20	35	32	1.88
14521--14617	32	3.0	32	89	5	135	11	20	35	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17218--17247	1	30.0	1	100	0	60	0	0	0	100	0.00
18346--18381	17	2.1	18	94	5	65	27	11	33	27	1.91
20541--20602	16	3.9	16	73	0	61	8	12	30	48	1.70
21120--21164	21	2.1	22	83	4	56	15	33	8	42	1.78
22985--23362	41	9.6	39	71	15	208	25	17	21	34	1.96
23029--23292	43	6.6	41	74	12	176	27	17	20	35	1.95
22985--23324	161	2.1	160	96	0	617	26	17	20	35	1.95
23102--23361	118	2.2	118	79	6	278	25	18	21	34	1.96
23369--23405	19	1.9	19	89	10	58	78	0	0	21	0.75
23372--23405	17	2.1	16	94	5	59	79	0	0	20	0.73

Tables:   1

The End!