Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016247.1 Corchorus capsularis cultivar CVL-1 contig16268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3110
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31


Found at i:1796 original size:42 final size:42

Alignment explanation


    Indices: 1736--1822  Score: 122
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       1726 AATGGATCGA

                                      *    *           
       1736 ATGGCCGGTTGTGACCGGATGG-TCCGTGCGTTGGCCCGTGCG
          1 ATGGCCGGTTGTGACCGGATGGCT-CATGCGATGGCCCGTGCG

                         *                   *        
       1778 ATGGCCGGTTGTGGCCGGATGGCTCATGCGATGTCCCGTGCG
          1 ATGGCCGGTTGTGACCGGATGGCTCATGCGATGGCCCGTGCG

               
       1820 ATG
          1 ATG

       1823 TCCCATGTGT


Statistics
Matches: 40,  Mismatches: 4, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  42   39  0.98
  43    1  0.03

ACGTcount: A:0.09, C:0.25, G:0.41, T:0.24


Consensus pattern (42 bp):   
ATGGCCGGTTGTGACCGGATGGCTCATGCGATGGCCCGTGCG
Done.