genome.fa.s16250.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016250.1 Corchorus capsularis cultivar CVL-1 contig16271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104460

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--97	28	2.0	31	84	9	81	35	16	1	46	1.57
38--97	31	2.0	31	84	9	81	35	16	1	46	1.57
3142--3174	2	16.0	2	93	6	57	48	0	3	48	1.17
3397--3453	4	14.8	4	82	14	75	71	1	0	26	0.95
3390--3452	31	2.0	31	100	0	126	71	3	0	25	1.01
5466--5852	137	2.8	139	81	8	453	43	8	11	36	1.71
5713--6030	166	1.9	165	82	5	399	44	9	11	34	1.73
6142--6468	140	2.4	138	88	5	475	42	10	9	37	1.72
6955--6980	13	2.0	13	100	0	52	53	0	0	46	1.00
6953--6983	16	1.9	16	93	0	53	51	0	0	48	1.00
7026--7107	41	2.0	42	92	4	141	12	18	1	68	1.27
7670--7742	21	3.2	21	65	31	51	27	12	9	50	1.71
8016--8170	76	2.2	73	84	11	198	43	9	10	36	1.72
13825--13861	6	6.2	6	93	0	65	81	2	16	0	0.81
15010--15052	7	6.0	7	84	10	52	2	0	11	86	0.67
15010--15052	11	3.8	11	85	11	52	2	0	11	86	0.67
15019--15060	19	2.2	19	83	8	50	0	7	9	83	0.81
17815--18090	144	1.9	145	93	0	482	23	19	18	37	1.94
29603--29663	30	2.0	30	100	0	122	29	13	24	32	1.93
31101--31131	3	10.3	3	100	0	62	67	0	0	32	0.91
31731--32072	178	1.9	176	84	4	458	41	9	11	37	1.74
32450--32502	23	2.3	24	75	15	58	26	7	16	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34105--34177	28	2.6	29	91	2	121	36	15	15	32	1.88
36756--36796	21	2.0	21	90	9	66	46	29	0	24	1.53
40747--41158	63	6.6	62	82	5	452	34	12	24	28	1.92
40747--41158	62	6.6	62	81	7	406	34	12	24	28	1.92
40747--41158	125	3.3	123	81	5	488	34	12	24	28	1.92
47244--47531	96	3.0	96	97	0	540	27	18	18	36	1.94
47985--48056	31	2.2	33	90	9	114	31	8	19	40	1.81
47998--48066	31	2.2	32	86	2	104	31	10	20	37	1.86
48842--48892	8	6.2	8	84	15	61	37	1	1	58	1.20
48846--48882	13	2.9	13	81	18	51	37	0	0	62	0.96
50768--50813	16	3.1	16	70	23	55	8	15	0	76	1.02
50736--50819	28	2.9	30	80	7	93	15	14	0	70	1.18
50936--50982	23	2.0	23	83	4	58	27	2	34	36	1.69
50830--51342	221	2.3	220	89	4	782	35	8	19	35	1.83
51821--51880	12	4.7	12	74	20	50	65	5	8	21	1.40
53693--53916	118	1.9	119	88	4	346	28	21	15	35	1.93
54930--54966	18	2.1	18	100	0	74	56	16	10	16	1.66
60389--60426	1	38.0	1	100	0	76	100	0	0	0	0.00
66163--66911	250	3.0	249	86	8	1067	39	21	11	26	1.87
73877--73950	33	2.2	34	83	7	107	12	25	37	24	1.90
75718--75780	30	2.1	30	91	5	101	19	34	14	31	1.91
77590--77627	20	1.9	20	94	0	67	34	26	7	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79022--79059	18	2.1	19	90	5	60	18	39	13	28	1.88
80884--80949	10	7.1	9	77	16	64	56	10	0	33	1.34
80893--80934	8	5.1	8	81	13	50	61	11	0	26	1.30
80884--80950	18	3.6	18	86	9	82	56	10	0	32	1.33
80943--81009	7	9.6	7	77	4	64	56	7	0	35	1.27
80945--81011	21	3.1	21	85	4	98	55	7	0	37	1.28
80945--81010	22	3.0	22	86	2	98	54	7	0	37	1.29
81037--81091	18	3.0	18	80	17	60	56	9	0	34	1.31
81209--81296	32	2.8	32	85	0	104	19	35	32	12	1.89
82547--82577	16	1.9	16	93	0	53	3	12	29	54	1.53
82571--82615	16	2.8	16	89	0	72	13	6	26	53	1.64
85628--85658	4	7.8	4	100	0	62	51	22	0	25	1.48
88868--88910	21	2.0	22	82	13	54	25	9	11	53	1.67
92252--92281	13	2.2	14	94	5	53	23	20	10	46	1.80
92478--92582	41	2.7	39	86	7	151	43	12	17	26	1.84
92484--92582	37	2.5	39	88	6	148	43	12	17	27	1.84
102064--102143	33	2.4	32	87	4	106	12	25	45	17	1.83
102090--102196	33	3.3	31	80	7	97	10	26	40	23	1.86

Tables:   1

The End!