Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016253.1 Corchorus capsularis cultivar CVL-1 contig16274, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4280
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:3861 original size:33 final size:33

Alignment explanation


    Indices: 3775--3882  Score: 112
    Period size: 33  Copynumber: 3.3  Consensus size: 33

       3765 GCGCCTAGCG

                               *   **         
       3775 ATGGCCGGTTG-TGACCGGACATGGCCATGTCGC
          1 ATGGCCGG-TGATGACCGGGCATCTCCATGTCGC

            *                                
       3808 GTGGCCGGTGATGACCGGGCATCTCCATGTCGC
          1 ATGGCCGGTGATGACCGGGCATCTCCATGTCGC

                      *     *           *     
       3841 ATGGCCGGTGTTG-CGTGGGCATCTCCAAGTCGC
          1 ATGGCCGGTGATGAC-CGGGCATCTCCATGTCGC

                *    
       3874 ATGGTCGGT
          1 ATGGCCGGT

       3883 CACTTGTGCT


Statistics
Matches: 64,  Mismatches: 9, Indels: 4
        0.83            0.12        0.05

Matches are distributed among these distances:
  32    3  0.05
  33   61  0.95

ACGTcount: A:0.13, C:0.27, G:0.37, T:0.23


Consensus pattern (33 bp):   
ATGGCCGGTGATGACCGGGCATCTCCATGTCGC
Done.