Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016258.1 Corchorus capsularis cultivar CVL-1 contig16279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53785

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1732--1838
56
1.9
56
86
7
155
25
18
17
38
1.93
7746--7774
13
2.1
14
93
6
51
20
20
10
48
1.79
7969--8074
41
2.7
39
86
7
153
44
12
16
26
1.83
7975--8075
37
2.6
39
89
6
152
43
11
16
27
1.83
14565--14649
33
2.5
33
76
12
93
40
20
9
30
1.84
15926--15966
21
2.0
21
95
0
73
14
36
34
14
1.87
17997--18021
9
2.8
9
100
0
50
12
8
60
20
1.57
19849--19894
19
2.4
19
85
7
58
13
6
26
54
1.62
20348--20662
58
5.4
57
91
0
459
43
6
19
31
1.75
20348--20889
116
4.9
115
76
14
532
43
4
18
33
1.71
20685--20894
53
3.9
53
80
7
251
46
3
17
32
1.64
27804--28176
188
2.0
189
96
0
685
27
21
19
31
1.97
28950--28979
2
15.5
2
93
6
53
46
0
0
53
1.00
30207--30270
30
2.1
30
85
5
85
39
14
21
25
1.91
30300--30464
82
2.0
82
83
4
208
38
9
18
32
1.84
30306--30464
41
3.9
41
82
3
169
38
8
19
33
1.83
33027--33222
41
4.7
41
77
8
164
38
8
20
31
1.83
38602--40889
667
3.4
665
79
9
2376
36
13
17
32
1.90
43438--43544
6
17.0
6
70
16
58
31
45
0
22
1.53
43437--43566
39
3.4
39
96
2
244
32
43
0
23
1.54
47609--47639
1
31.0
1
100
0
62
0
0
0
100
0.00
52560--52631
36
2.0
36
97
0
135
18
13
45
22
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53752--53785
2
17.5
2
93
6
61
50
0
0
50
1.00

Tables:   1

The End!