genome.fa.s16259.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016259.1 Corchorus capsularis cultivar CVL-1 contig16280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48456

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940--2227	32	8.5	32	81	9	290	28	19	7	44	1.77
1948--2241	68	4.3	68	87	6	373	28	20	6	44	1.77
1961--2227	100	2.6	101	84	6	328	29	19	7	44	1.77
2238--2775	41	13.1	40	86	5	688	23	20	10	45	1.81
2800--2882	35	2.3	36	87	4	114	24	16	9	49	1.76
2982--3337	41	9.3	41	74	19	304	28	20	9	41	1.83
3023--3313	70	4.0	70	78	13	334	28	20	8	41	1.82
2968--3199	111	2.1	112	86	4	326	29	19	9	40	1.83
3017--3347	111	3.0	106	74	15	269	28	20	8	42	1.82
2982--3337	152	2.3	151	88	4	520	28	20	9	41	1.83
19661--19793	40	3.3	40	89	6	200	17	21	2	58	1.49
19766--19815	22	2.3	22	93	3	84	14	20	4	62	1.47
19789--20015	40	5.7	40	86	7	300	21	23	3	51	1.61
19687--19895	102	2.1	101	86	4	287	17	22	2	56	1.54
19790--20015	120	1.9	120	88	5	341	21	23	3	51	1.62
19648--19935	142	2.0	141	86	4	393	19	23	3	54	1.59
20011--20066	17	3.4	17	65	9	53	16	26	8	48	1.75
19994--20113	32	3.8	32	94	2	206	15	23	6	54	1.65
20116--20176	30	2.0	30	83	0	77	21	22	1	54	1.54
20165--20327	58	2.9	56	88	3	227	26	18	4	50	1.65
20628--20660	6	5.5	6	100	0	66	54	15	0	30	1.41
20657--20697	13	3.2	13	93	3	66	60	7	9	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24969--25049	26	3.0	27	79	13	94	60	3	19	16	1.50
24970--25118	27	5.1	28	73	22	103	58	3	18	19	1.53
24942--25178	90	2.6	90	84	8	304	53	3	21	21	1.60
25061--25145	27	3.1	27	86	6	109	54	4	23	17	1.62
25141--25205	33	2.0	33	87	0	94	55	0	16	27	1.42
26688--26713	3	8.7	3	100	0	52	30	0	0	69	0.89
33756--33782	8	3.4	8	100	0	54	37	0	29	33	1.58
34882--34935	27	2.0	27	92	0	90	40	3	24	31	1.72
41245--41281	2	19.0	2	88	5	58	48	0	0	51	1.00
42563--42601	11	3.5	11	86	13	53	56	2	0	41	1.13
43487--43550	30	2.1	30	91	2	101	43	21	14	20	1.87
43990--44083	46	2.0	46	95	0	170	34	29	10	25	1.90
46481--46510	12	2.5	12	94	0	51	33	13	23	30	1.93
48187--48212	10	2.6	10	100	0	52	30	7	23	38	1.83

Tables:   1

The End!