Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016262.1 Corchorus capsularis cultivar CVL-1 contig16283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5993
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38


Found at i:2328 original size:2 final size:2

Alignment explanation


    Indices: 2316--2362  Score: 53
    Period size: 2  Copynumber: 24.5  Consensus size: 2

       2306 ATAAACATAA

                                             *        *        *          
       2316 AT AT AT A- AT AT AT AT AT AT AT CT AT AT CT AT AT CT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                      
       2357 -T AT AT A
          1 AT AT AT A

       2363 AGTCTAAACT


Statistics
Matches: 37,  Mismatches: 6, Indels: 4
        0.79            0.13        0.09

Matches are distributed among these distances:
   1    2  0.05
   2   35  0.95

ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.