genome.fa.s16263.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016263.1 Corchorus capsularis cultivar CVL-1 contig16284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12035

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664--693	14	2.1	15	93	6	53	73	3	0	23	0.98
1007--1078	12	4.9	16	77	20	61	37	8	12	41	1.73
1028--1069	12	3.5	12	93	0	75	38	7	14	40	1.73
3161--3206	21	2.2	21	100	0	92	50	8	23	17	1.74
4463--4502	19	2.2	19	95	4	73	42	27	10	20	1.83
4589--4629	2	21.0	2	95	5	75	51	0	0	48	1.00
4963--5392	22	19.7	22	68	13	147	36	14	9	39	1.79
5121--5224	46	2.3	44	83	6	127	37	13	8	40	1.75
5097--5430	44	7.8	43	72	14	151	33	14	9	42	1.78
5380--5430	19	2.6	20	90	6	86	25	17	11	45	1.83
5536--5761	22	10.3	22	73	7	156	33	14	10	41	1.80
5536--5684	66	2.3	66	83	2	174	34	14	10	40	1.79
5536--5821	22	12.8	22	70	17	96	34	15	9	40	1.80
5511--5832	44	7.2	43	71	12	181	34	14	9	40	1.79
5858--5900	22	2.0	22	86	9	61	30	18	9	41	1.82
5932--5995	22	2.8	22	78	4	65	42	21	7	28	1.81
5986--6063	22	3.5	22	82	3	86	35	16	14	33	1.89
6263--6300	19	2.0	20	85	15	53	63	2	5	28	1.30
6613--6678	31	2.1	31	86	5	89	46	4	21	27	1.70
6707--6754	2	23.5	2	91	4	78	47	0	4	47	1.21
7312--7402	31	2.9	31	83	3	103	37	9	17	35	1.83
7343--7419	31	2.5	30	83	10	93	41	9	18	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8629--8724	32	2.9	32	85	3	111	21	16	31	30	1.96
8631--8724	16	5.8	16	81	8	100	22	15	31	29	1.95
8632--8742	17	6.7	17	83	5	129	23	14	31	30	1.94
9667--9851	27	6.5	27	77	13	74	8	31	35	24	1.86
9697--9905	27	7.4	27	74	12	145	8	31	33	25	1.86
9665--9851	85	2.2	84	81	5	214	8	31	34	25	1.86
9698--9905	57	3.6	58	82	11	241	8	31	34	25	1.86
11815--11861	12	3.9	12	86	10	69	51	23	17	8	1.72

Tables:   1

The End!