genome.fa.s16268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016268.1 Corchorus capsularis cultivar CVL-1 contig16289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82523

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897--954	29	2.0	29	86	0	80	25	29	34	10	1.89
1107--1158	20	2.5	20	90	3	77	67	0	17	15	1.24
1122--1165	20	2.2	20	83	0	52	70	0	22	6	1.11
1454--1486	2	17.0	2	93	6	59	51	0	0	48	1.00
1839--1956	59	2.0	59	100	0	236	6	16	23	52	1.68
2024--2066	20	2.1	21	87	12	63	30	23	11	34	1.90
2024--2062	12	3.6	12	80	19	50	28	25	12	33	1.93
3273--3315	12	3.5	12	87	6	68	23	23	18	34	1.96
7609--7882	137	2.0	137	91	0	449	26	13	38	21	1.91
10322--10377	24	2.3	24	90	0	85	51	8	10	28	1.66
14045--14075	2	15.5	2	100	0	62	51	48	0	0	1.00
17636--18428	400	2.0	400	97	0	1487	38	16	16	28	1.91
18928--18987	16	3.8	16	81	0	57	33	33	20	13	1.91
27316--27378	30	2.1	30	91	5	101	20	34	15	28	1.94
27750--27855	33	3.2	33	85	2	151	40	16	8	33	1.79
27750--27843	32	2.9	32	87	3	125	43	18	7	30	1.77
27871--27975	33	3.2	33	78	5	95	43	20	9	26	1.82
37144--37206	30	2.1	30	91	5	101	19	33	17	30	1.95
37590--37696	33	3.2	33	93	0	187	39	17	8	34	1.80
37590--37713	66	1.9	66	86	3	178	39	19	8	33	1.81
37677--37755	33	2.4	33	82	4	97	39	22	7	30	1.82
37727--37816	33	2.7	32	76	6	90	44	22	8	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40442--40500	30	2.0	30	93	6	102	20	30	18	30	1.96
48080--48141	30	2.1	30	90	6	99	22	32	14	30	1.94
48499--48617	33	3.6	33	95	2	213	45	17	10	26	1.81
48646--48751	33	3.2	33	78	2	124	46	18	8	26	1.78
54287--54327	13	3.2	13	92	0	64	12	17	43	26	1.84
54352--54404	21	2.5	21	81	0	52	18	28	39	13	1.88
54813--55033	110	2.0	110	100	0	442	43	10	11	33	1.76
69473--69533	22	2.6	22	89	7	86	55	4	14	24	1.59
69520--69603	35	2.4	33	84	11	96	42	9	4	42	1.58
79184--79291	33	3.3	32	81	5	126	20	41	29	8	1.81
79274--79325	10	4.9	10	73	13	50	23	48	23	5	1.72
79266--79328	33	1.9	33	100	0	126	22	44	25	7	1.79

Tables:   1

The End!