Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016269.1 Corchorus capsularis cultivar CVL-1 contig16290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57647

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116--183
26
2.6
26
86
9
102
33
1
10
54
1.43
86--177
11
7.1
13
69
22
59
34
2
7
55
1.40
192--251
25
2.5
25
86
5
79
43
0
20
36
1.52
1947--2023
29
2.7
29
97
0
145
36
35
14
14
1.86
11524--11550
13
2.1
13
100
0
54
62
14
14
7
1.51
13810--14767
114
8.6
114
85
5
1170
25
20
20
33
1.97
13921--14109
98
1.9
99
91
1
308
25
20
17
35
1.94
15921--16019
42
2.3
43
83
11
125
43
13
13
30
1.81
22090--22230
33
4.3
32
85
5
131
9
27
41
21
1.84
29109--29143
17
2.0
17
88
5
52
54
2
14
28
1.54
36073--36169
33
2.9
33
87
3
124
21
39
29
9
1.85
36155--36217
33
1.9
33
93
0
108
25
41
25
7
1.82
38857--38892
12
2.8
14
84
16
51
5
13
0
80
0.88
54193--54245
20
2.7
20
90
0
79
33
7
18
39
1.79
55948--56000
23
2.4
22
75
6
54
50
16
15
16
1.78

Tables:   1

The End!