Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016272.1 Corchorus capsularis cultivar CVL-1 contig16293, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16291

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1420--1471
25
2.1
25
92
0
86
38
11
21
28
1.88
1905--2175
27
10.1
26
72
14
169
19
22
3
54
1.59
2011--2118
24
3.9
29
72
20
88
19
21
1
57
1.50
2011--2075
29
2.2
31
86
5
89
16
18
1
63
1.40
2334--2380
24
2.0
24
91
0
76
36
17
4
42
1.68
2596--2716
34
3.5
34
72
14
120
27
17
6
48
1.71
2575--2728
71
2.2
71
93
0
263
26
19
6
47
1.73
2672--2989
55
5.8
55
95
1
548
25
18
7
48
1.75
6150--6187
19
2.0
20
94
5
69
42
28
10
18
1.83
7309--7368
30
2.0
30
96
0
111
16
35
10
38
1.82
12480--12598
64
1.9
63
83
1
157
42
18
10
28
1.84
16015--16130
27
4.4
25
74
16
110
20
20
4
54
1.61
16002--16228
52
4.2
52
73
16
153
20
22
3
53
1.60
16103--16210
24
3.9
29
72
20
88
19
21
1
57
1.50
16103--16167
29
2.2
31
86
5
89
16
18
1
63
1.40
16016--16244
26
8.7
25
71
21
132
20
21
3
54
1.59

Tables:   1

The End!