Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016275.1 Corchorus capsularis cultivar CVL-1 contig16296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50242

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1056--1346
145
2.0
145
98
0
564
38
14
21
24
1.91
8206--8356
63
2.4
62
82
5
169
43
18
9
27
1.82
11855--12104
27
9.6
25
71
21
142
18
22
3
55
1.58
11838--11966
55
2.4
56
77
16
146
19
20
4
55
1.60
12436--12650
71
3.0
70
85
6
229
26
19
6
47
1.73
12519--12569
15
3.1
17
71
23
54
27
15
7
49
1.72
12498--12650
71
2.2
71
92
1
254
26
19
6
47
1.74
12594--13021
55
7.8
55
96
1
768
25
19
7
47
1.75
13863--13996
49
2.7
49
87
1
160
37
18
5
38
1.74
13787--14002
50
4.4
49
79
6
195
36
18
6
38
1.76
15933--15968
18
2.0
18
100
0
72
38
16
11
33
1.84
16197--16234
19
2.0
20
94
5
69
42
28
10
18
1.83
17776--17800
13
1.9
13
100
0
50
60
8
32
0
1.26
17778--17926
65
2.3
65
96
0
280
49
5
19
25
1.69
18050--18528
65
7.4
65
89
0
658
32
14
25
27
1.95
18871--19274
50
8.1
50
82
1
488
35
12
28
24
1.91
18881--19247
100
3.7
100
92
0
563
34
12
29
23
1.91
23985--24018
9
3.7
9
88
4
50
67
0
20
11
1.21
23984--24018
19
1.9
17
88
11
52
65
0
22
11
1.24
24031--24062
13
2.4
13
94
5
55
46
6
12
34
1.67
26605--26644
19
2.2
19
95
4
73
32
20
0
47
1.50
30437--30478
21
2.0
20
86
4
57
26
21
11
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33568--33605
20
2.0
20
89
5
60
36
5
31
26
1.79
46153--47070
458
2.0
458
99
0
1800
31
16
22
29
1.96
47789--47823
10
3.7
9
88
11
52
82
0
0
17
0.66

Tables:   1

The End!