Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016284.1 Corchorus capsularis cultivar CVL-1 contig16305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6283
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:5448 original size:10 final size:10

Alignment explanation


    Indices: 5433--5458  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       5423 AGTTGCTGCC

                      
       5433 AAATTCCAGA
          1 AAATTCCAGA

                      
       5443 AAATTCCAGA
          1 AAATTCCAGA

                  
       5453 AAATTC
          1 AAATTC

       5459 TAGAGTCCTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.50, C:0.19, G:0.08, T:0.23


Consensus pattern (10 bp):   
AAATTCCAGA
Done.