Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016286.1 Corchorus capsularis cultivar CVL-1 contig16307, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20106

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
800--834
13
2.7
13
95
0
61
20
11
8
60
1.57
831--857
6
4.5
6
100
0
54
29
0
14
55
1.40
1292--1359
35
1.9
36
88
8
104
29
11
2
55
1.50
1304--1379
36
2.1
35
83
7
91
26
11
3
57
1.51
7943--7977
13
2.7
13
95
0
61
20
11
8
60
1.57
7974--8000
6
4.5
6
100
0
54
29
0
14
55
1.40
12533--12565
16
2.2
16
89
10
52
30
12
42
15
1.83
13922--14081
67
2.4
67
89
1
241
51
8
23
16
1.71
13922--14089
11
15.1
11
86
2
174
51
8
23
16
1.72
14079--14463
36
10.8
35
84
6
463
43
8
21
25
1.80
14083--14463
72
5.3
71
87
3
516
43
8
21
26
1.81
14477--14595
36
3.4
35
80
13
147
47
6
18
27
1.74
14083--14494
143
2.9
141
85
6
440
44
8
21
26
1.80
14467--14595
68
1.9
68
90
3
206
48
6
17
27
1.71
14467--14574
32
3.2
32
78
14
128
48
6
17
27
1.72
16115--16162
11
4.8
10
78
19
55
41
20
0
37
1.53
16115--16150
18
1.9
18
88
5
54
38
22
0
38
1.54
17542--17583
21
2.0
21
86
9
59
42
23
9
23
1.83

Tables:   1

The End!