Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016287.1 Corchorus capsularis cultivar CVL-1 contig16308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39116

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5114--5179
28
2.3
27
82
10
87
30
18
18
33
1.94
6893--6919
6
4.5
6
100
0
54
55
14
0
29
1.40
7854--7878
10
2.5
10
100
0
50
24
8
20
48
1.76
13643--13672
11
2.7
11
94
0
51
40
20
0
40
1.52
15230--15270
21
2.0
21
85
9
57
48
19
9
21
1.77
15354--15385
16
2.0
16
93
0
55
53
21
6
18
1.67
16602--16632
15
2.1
15
93
0
53
9
19
29
41
1.83
17046--17086
18
2.3
18
100
0
82
21
48
21
7
1.74
19512--19584
33
2.2
33
82
0
83
26
10
20
42
1.85
19602--19771
33
5.2
33
90
4
258
27
11
19
42
1.85
21504--21548
21
2.1
21
84
8
56
33
8
28
28
1.87
24010--24049
19
2.2
18
86
4
53
30
20
5
45
1.72
25642--25680
21
1.9
19
85
10
51
41
20
10
28
1.85
27196--27274
35
2.2
38
86
6
110
58
6
13
21
1.58

Tables:   1

The End!