Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016289.1 Corchorus capsularis cultivar CVL-1 contig16310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53903

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
659--688
10
3.0
10
100
0
60
30
50
20
0
1.49
15409--15493
41
2.1
41
84
8
111
16
10
17
55
1.69
17823--17875
21
2.2
25
71
28
69
35
20
22
20
1.96
17830--17884
21
2.6
21
100
0
110
30
20
23
25
1.98
17993--18051
30
2.0
30
90
6
93
22
30
16
30
1.96
18430--18571
33
4.3
33
95
0
239
44
16
11
27
1.82
18430--18604
66
2.7
66
86
1
208
42
17
10
28
1.83
18597--18701
33
3.2
33
79
2
122
45
20
9
24
1.80
20079--20109
5
6.4
5
92
7
55
19
0
0
80
0.71
20188--20221
8
4.1
8
85
7
50
23
2
14
58
1.50
24136--24209
37
2.0
37
100
0
148
45
10
10
32
1.74
24972--25239
134
2.0
134
99
0
529
47
18
10
23
1.79
25831--25870
20
2.0
21
85
14
57
67
10
12
10
1.42
30572--30604
16
2.1
16
94
0
57
18
36
18
27
1.94
30608--30634
12
2.2
12
100
0
54
14
33
18
33
1.92
37777--38532
49
15.5
49
86
1
932
30
13
32
23
1.93
37777--38543
146
5.2
145
83
3
948
30
13
32
23
1.93
39502--39535
17
2.1
16
94
5
59
8
44
0
47
1.34
42904--42946
22
2.0
21
82
13
52
51
13
13
20
1.76
45483--45607
60
2.1
60
84
3
162
35
19
12
32
1.89
45814--45914
47
2.2
47
94
1
177
42
7
14
34
1.75
48104--48536
215
2.0
215
96
0
796
33
19
14
32
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48511--48568
27
2.1
27
96
0
107
18
10
8
62
1.53
49797--49826
2
15.0
2
100
0
60
50
0
0
50
1.00
52258--52304
22
2.1
22
96
0
85
42
4
6
46
1.48
52258--52300
11
3.9
11
90
0
68
41
4
6
46
1.51
53681--53711
2
15.5
2
100
0
62
48
0
0
51
1.00
53740--53766
13
2.1
13
100
0
54
70
14
0
14
1.17
53778--53838
20
3.0
21
85
7
72
80
4
8
6
1.02
53784--53848
20
3.2
20
80
4
69
76
4
12
6
1.12

Tables:   1

The End!