genome.fa.s16294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016294.1 Corchorus capsularis cultivar CVL-1 contig16315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22791

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449--497	24	2.0	25	84	4	64	24	26	20	28	1.99
758--805	24	2.0	24	87	0	69	12	6	2	79	1.01
1185--1352	86	2.0	83	83	8	214	28	20	22	29	1.98
1880--1949	32	2.2	32	94	0	122	8	42	32	15	1.77
2020--2162	33	4.3	33	83	5	166	15	25	39	19	1.91
3231--3281	22	2.3	21	78	15	59	43	0	5	50	1.26
5077--5368	108	2.6	108	90	6	428	48	1	11	38	1.50
8945--8985	2	20.5	2	89	0	64	48	0	4	46	1.23
8967--9317	175	2.0	175	97	0	666	35	11	13	39	1.81
11865--11948	25	3.4	25	90	3	127	34	28	0	36	1.58
12101--12214	32	3.6	32	89	0	165	21	30	32	14	1.94
12326--12367	15	2.9	15	82	3	50	28	0	9	61	1.27
12549--12585	15	2.7	14	80	19	51	29	0	13	56	1.37
12873--12968	30	3.4	27	83	13	99	32	13	42	11	1.80
12894--12968	30	2.5	30	91	0	114	32	14	42	10	1.80
16096--16141	15	3.3	15	77	22	64	54	10	0	34	1.36
16107--16153	11	3.9	11	80	20	58	55	10	0	34	1.35
16096--16164	26	2.7	26	95	0	120	56	11	0	31	1.35
16627--16760	50	2.7	50	96	0	241	30	17	26	24	1.97
18255--18279	2	12.5	2	100	0	50	48	0	0	52	1.00
19632--19671	14	2.9	14	84	0	53	47	7	2	42	1.45
20056--20162	45	2.4	45	82	3	117	38	12	9	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20083--20162	23	3.5	23	86	3	108	41	11	5	42	1.62
19924--20253	22	15.1	22	71	11	105	37	15	9	38	1.79
20433--20687	22	11.6	23	69	18	100	32	15	9	41	1.80
20544--20764	22	9.9	22	69	19	84	33	15	9	40	1.81
20725--20801	22	3.5	22	78	5	75	38	18	9	33	1.82
20885--21072	22	8.4	22	71	14	116	39	18	9	32	1.82
20937--21068	44	3.0	44	81	5	151	37	15	10	36	1.82
21244--21281	19	2.0	20	85	15	53	63	2	5	28	1.30
21444--21511	31	2.2	32	89	2	102	50	4	13	32	1.61

Tables:   1

The End!