Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016296.1 Corchorus capsularis cultivar CVL-1 contig16317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34019

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6834--6909
31
2.5
31
76
4
82
27
6
31
34
1.83
10184--10301
63
1.9
62
92
1
200
26
11
20
42
1.85
10808--10850
16
2.6
16
92
3
68
48
11
0
39
1.40
12238--12264
11
2.5
11
100
0
54
29
0
22
48
1.51
13114--13149
2
18.5
2
94
5
65
50
0
0
50
1.00
23030--23072
22
2.0
22
90
0
68
51
6
23
18
1.70
23098--23138
1
41.0
1
85
0
55
92
0
4
2
0.44
23092--23139
14
3.4
14
85
5
69
87
0
6
6
0.67
29393--29432
20
2.0
20
85
0
53
5
12
0
82
0.82
29449--29709
107
2.5
104
89
5
382
40
9
9
40
1.70
31441--31474
16
2.1
17
88
5
52
58
0
23
17
1.38
33978--34019
2
21.0
2
100
0
84
50
0
50
0
1.00

Tables:   1

The End!