Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016299.1 Corchorus capsularis cultivar CVL-1 contig16320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32603

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2114--2183
34
2.1
34
100
0
140
50
2
14
32
1.58
4098--4143
23
2.0
23
91
0
74
52
17
8
21
1.71
11079--11361
145
2.0
145
92
2
482
48
10
21
20
1.79
17337--17373
19
2.0
18
89
5
56
32
21
2
43
1.67
20445--20494
11
4.3
12
82
7
59
42
0
0
58
0.98
20907--20982
21
3.5
22
75
12
77
43
10
7
38
1.68
21213--21311
44
2.2
44
92
0
126
34
17
15
33
1.91
21328--21397
23
3.1
22
87
2
86
40
14
5
40
1.69
21339--21397
23
2.6
23
94
2
102
37
11
6
44
1.68
21428--21595
22
7.6
23
71
14
88
32
20
7
39
1.81
21666--21707
22
1.9
22
95
0
75
45
23
4
26
1.73
22597--22663
31
2.1
32
88
5
109
52
5
16
25
1.66
22604--22669
31
2.1
31
94
0
114
53
6
19
21
1.67
22769--22813
22
2.0
22
86
0
63
42
13
4
40
1.64
22881--22929
22
2.2
22
85
7
64
28
14
4
53
1.59
22911--23192
22
12.7
22
71
12
87
37
15
10
36
1.82
23090--23214
23
5.6
22
81
5
117
36
14
8
40
1.77
23091--23214
45
2.8
45
83
8
137
37
14
8
40
1.76
27768--27809
21
2.0
21
95
0
75
52
16
4
26
1.63

Tables:   1

The End!