Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016300.1 Corchorus capsularis cultivar CVL-1 contig16321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49940

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1746--1779
11
2.9
12
86
8
52
26
5
8
58
1.51
1749--1789
11
3.5
12
87
9
50
24
2
12
60
1.43
3725--3749
10
2.5
10
100
0
50
24
8
20
48
1.76
4657--5087
237
1.8
238
86
2
634
29
16
17
37
1.91
5446--6725
306
4.0
311
80
9
1278
32
14
16
36
1.89
13587--13825
78
3.2
78
88
6
343
50
0
12
36
1.46
13593--13825
70
3.2
71
84
10
301
49
0
12
36
1.46
28921--28979
20
2.9
20
87
7
84
61
15
1
22
1.43
30786--30828
17
2.5
17
100
0
86
37
25
20
16
1.93
31080--31157
29
2.7
28
77
15
86
39
29
14
16
1.88
32264--32346
38
2.2
38
85
6
107
16
20
8
54
1.68
32945--32994
20
2.5
20
93
0
82
42
10
18
30
1.82
32945--33416
44
10.8
44
68
14
223
38
10
16
34
1.82
33132--33211
23
3.5
23
86
3
108
38
8
15
37
1.78
33003--33233
128
1.8
127
83
2
311
40
9
16
34
1.80
33003--33215
45
4.9
44
72
13
138
40
9
15
33
1.80
33008--33246
22
11.0
22
73
13
147
40
9
16
33
1.81
33398--33446
22
2.2
22
85
7
64
53
4
14
28
1.59

Tables:   1

The End!