Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016301.1 Corchorus capsularis cultivar CVL-1 contig16322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39653

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
6293--6341
24
2.0
24
84
0
62
63
2
0
34
1.06
11250--11279
15
2.0
15
93
0
51
30
6
13
50
1.67
16982--17077
49
2.0
49
97
0
183
43
10
5
40
1.61
20318--20366
11
4.5
11
82
10
64
55
12
24
8
1.64
20318--20366
22
2.2
23
85
10
75
55
12
24
8
1.64
22395--22430
18
2.0
18
94
0
63
52
5
0
41
1.24
22624--22656
16
2.1
15
94
5
57
57
0
0
42
0.98
22631--22680
19
2.7
19
81
9
59
56
0
4
40
1.18
35347--35371
2
12.5
2
100
0
50
52
0
48
0
1.00
38351--38411
28
2.2
28
93
0
104
44
18
0
37
1.50
39028--39065
14
2.8
14
81
18
53
63
0
0
36
0.95
39549--39620
32
2.2
32
100
0
144
15
31
40
12
1.84

Tables:   1

The End!