Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016302.1 Corchorus capsularis cultivar CVL-1 contig16323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53733

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99--142
21
2.1
21
91
0
70
36
11
29
22
1.89
809--998
62
3.0
63
86
3
251
43
10
12
33
1.77
10494--10541
24
2.1
23
84
7
62
43
2
12
41
1.54
12938--13009
30
2.4
30
90
6
112
15
15
11
58
1.63
14259--14317
29
2.0
29
96
0
109
27
11
32
28
1.92
20655--20711
30
1.9
30
92
0
96
56
10
15
17
1.67
21326--21360
17
2.1
17
100
0
70
51
14
17
17
1.77
21968--22028
24
2.5
24
89
5
88
22
32
6
37
1.80
22492--22807
156
2.0
158
87
6
462
45
14
12
27
1.81
23336--23393
2
29.0
2
100
0
116
50
50
0
0
1.00
23565--23784
111
2.0
112
91
0
361
44
12
10
32
1.77
28512--28552
16
2.6
16
96
0
73
46
0
4
48
1.23
28694--28719
10
2.6
10
100
0
52
30
30
0
38
1.58
28756--28823
26
2.6
26
85
0
91
52
8
2
35
1.47
30479--30517
19
2.1
18
90
4
60
58
20
5
15
1.55
40699--40733
18
2.0
17
88
5
52
82
0
17
0
0.66
46847--46884
18
2.1
18
100
0
76
18
36
34
10
1.85
46845--46894
18
2.5
20
81
18
68
16
34
36
14
1.88
49643--49695
27
1.9
27
88
3
79
62
7
7
22
1.47
50762--50909
71
2.1
71
97
0
278
43
8
11
35
1.72
51464--51521
30
1.9
31
85
3
82
41
12
8
37
1.73
52073--52234
60
2.7
59
91
3
245
35
18
20
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52133--52236
31
3.4
30
72
15
106
34
19
21
25
1.96
52104--52203
29
3.4
29
67
17
80
32
17
23
28
1.96
52267--52371
31
3.5
30
73
15
108
26
19
19
35
1.95
53687--53725
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!