genome.fa.s16303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016303.1 Corchorus capsularis cultivar CVL-1 contig16324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94982

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777--1829	12	3.9	12	74	25	52	56	22	16	3	1.56
28975--29018	16	2.9	16	75	25	51	43	4	6	45	1.51
35839--35880	20	2.1	20	100	0	84	28	4	33	33	1.78
42699--42728	16	1.9	15	93	6	51	86	0	13	0	0.57
47815--47840	2	13.0	2	100	0	52	50	0	0	50	1.00
48923--48957	12	2.9	12	91	0	61	45	0	54	0	0.99
48924--48955	15	2.1	15	94	0	55	43	0	56	0	0.99
51894--51940	24	2.0	24	100	0	94	55	0	6	38	1.26
51894--51952	24	2.5	24	91	0	91	54	0	8	37	1.31
51955--52003	18	2.8	18	80	20	59	46	2	2	48	1.25
59886--59915	12	2.4	13	94	5	53	13	10	0	76	1.01
66110--66139	2	15.0	2	100	0	60	50	0	0	50	1.00
66852--66876	5	5.0	5	100	0	50	40	20	20	20	1.92
78329--78385	30	1.9	31	89	10	93	8	12	3	75	1.16
78329--78387	28	2.1	28	84	12	77	8	13	3	74	1.17
83611--83649	13	3.1	13	88	7	62	38	15	0	46	1.46
83636--83701	33	2.0	33	100	0	132	30	12	15	42	1.83
84109--84134	8	3.2	8	100	0	52	11	23	23	42	1.86
85923--85947	2	12.5	2	100	0	50	0	52	0	48	1.00
85957--86007	27	2.0	25	81	14	59	3	60	5	29	1.38
86048--86095	4	11.8	4	82	4	51	0	64	4	31	1.12
86046--86097	25	2.1	24	85	3	68	0	63	3	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86245--86844	86	7.0	85	88	1	860	9	27	30	32	1.89
86245--86841	171	3.5	169	88	2	863	9	26	30	32	1.89
86244--86844	256	2.3	256	88	1	900	9	27	30	32	1.89
89348--89959	329	1.8	334	84	4	835	37	14	15	31	1.88
90023--91303	330	3.9	328	75	9	1021	36	14	14	33	1.88
91311--94982	331	11.2	330	78	6	3524	36	15	14	33	1.88
91344--94956	649	5.5	649	76	9	2732	36	15	14	33	1.89
91312--94953	980	3.7	970	78	8	3464	36	15	14	33	1.88

Tables:   1

The End!