Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016304.1 Corchorus capsularis cultivar CVL-1 contig16325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31700

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--1872
330
5.7
328
78
6
1733
36
15
14
33
1.87
43--1872
332
5.5
328
79
5
1738
36
15
14
33
1.87
1893--2702
329
2.4
330
81
6
899
36
14
14
34
1.86
2287--3275
492
2.0
489
91
1
1579
36
14
15
32
1.89
2780--8268
330
16.6
329
78
6
4964
36
15
14
33
1.88
2786--8268
993
5.5
989
80
6
5060
36
15
14
33
1.88
2780--8268
662
8.3
657
78
7
4939
36
15
14
33
1.88
8380--10409
331
6.1
329
81
5
2187
36
16
14
33
1.89
17296--17320
2
12.5
2
100
0
50
52
0
0
48
1.00
20547--20643
31
3.1
31
85
2
124
15
28
24
30
1.96
24111--24137
4
6.8
4
100
0
54
22
0
0
77
0.76
29343--29391
24
2.0
24
100
0
98
4
42
8
44
1.53

Tables:   1

The End!