genome.fa.s16306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016306.1 Corchorus capsularis cultivar CVL-1 contig16327, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74919

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313--1337	2	12.5	2	100	0	50	48	0	0	52	1.00
8949--9193	62	4.0	61	79	11	234	32	19	14	34	1.91
16811--16848	7	5.6	7	93	6	69	13	26	0	60	1.33
17282--17493	75	2.8	75	81	7	255	41	13	11	33	1.81
20260--20343	31	2.7	31	81	3	80	39	22	22	15	1.92
20347--20408	31	2.0	31	87	0	88	35	25	22	16	1.94
29176--29235	16	3.9	15	89	10	95	26	15	11	46	1.79
29177--29235	30	2.0	30	96	0	109	25	15	11	47	1.79
33287--33320	13	2.8	12	82	8	50	29	14	5	50	1.67
42545--42612	12	5.5	12	84	6	91	36	13	22	27	1.91
42545--42612	25	2.7	25	93	0	109	36	13	22	27	1.91
43591--43626	10	3.6	10	88	0	54	33	5	19	41	1.75
43588--43626	20	2.0	20	94	0	69	33	5	17	43	1.72
55024--55078	22	2.4	23	81	3	67	38	18	12	30	1.88
55128--55231	23	4.6	22	82	4	102	40	12	7	39	1.72
55130--55253	22	5.5	23	80	5	103	38	12	8	40	1.74
55291--55408	22	5.4	22	70	11	89	35	17	8	38	1.81
55298--55400	44	2.3	44	82	12	115	37	13	9	38	1.78
55388--55438	19	2.6	20	81	6	68	27	17	13	41	1.87
55544--55790	22	11.3	22	70	10	141	33	14	9	42	1.78
55520--55689	44	3.9	44	76	13	145	35	12	10	42	1.76
55544--55691	66	2.2	66	81	2	163	35	13	10	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55519--55685	88	1.9	88	85	4	230	34	13	10	42	1.77
55544--55828	22	12.8	22	67	18	103	33	14	9	42	1.79
55948--56155	66	3.1	64	76	12	195	37	18	10	33	1.85
55948--56154	22	9.3	21	81	6	171	37	18	10	33	1.86
56423--56517	31	3.1	31	96	3	176	47	3	18	30	1.65
57436--57460	2	12.5	2	100	0	50	52	0	0	48	1.00
60733--60761	3	10.0	3	92	7	51	65	0	0	34	0.93
60733--60765	14	2.4	14	95	5	59	66	0	0	33	0.92
60728--60765	17	2.3	17	90	4	60	63	0	2	34	1.09
62890--62947	17	3.4	17	83	9	82	29	20	24	25	1.99
63845--64673	330	2.5	330	80	6	892	38	13	14	33	1.85
64699--67770	331	9.3	329	80	6	3097	37	14	14	33	1.87
64730--69306	665	7.1	652	77	11	3653	37	15	14	32	1.88
67918--69300	333	4.2	332	79	9	1366	37	15	14	32	1.88
69455--70917	334	4.4	329	82	6	1452	37	15	13	32	1.87
71110--72512	333	4.2	331	78	9	1304	36	16	13	33	1.88
72694--74758	335	6.2	332	84	5	2249	36	15	14	32	1.89

Tables:   1

The End!