Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016308.1 Corchorus capsularis cultivar CVL-1 contig16329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121008

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
685--712
2
14.0
2
100
0
56
50
0
0
50
1.00
814--855
2
22.0
2
85
9
61
45
0
2
52
1.13
26093--26133
17
2.4
17
91
0
64
68
0
4
26
1.10
62402--62439
20
2.0
20
94
5
69
60
10
21
7
1.54
71411--71455
22
2.0
22
100
0
90
13
20
13
53
1.72
74069--74243
92
1.9
92
97
0
332
44
11
6
38
1.66
78419--78476
29
2.0
29
100
0
116
34
34
6
24
1.82
80964--80998
16
2.1
17
94
5
63
17
22
11
48
1.79
84473--84501
14
2.1
14
100
0
58
34
44
6
13
1.71
85267--85360
43
2.2
43
100
0
188
31
20
0
47
1.50
107721--107779
29
2.0
29
100
0
118
16
44
3
35
1.65
118104--118146
20
2.0
20
82
8
50
44
2
4
48
1.36

Tables:   1

The End!