Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001631.1 Corchorus capsularis cultivar CVL-1 contig01631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:976 original size:16 final size:16

Alignment explanation


    Indices: 955--985  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        945 GTTTTTGGGG

                            
        955 TTGCCCTCTACCTCTT
          1 TTGCCCTCTACCTCTT

                           
        971 TTGCCCTCTACCTCT
          1 TTGCCCTCTACCTCT

        986 AATGAAATAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.06, C:0.45, G:0.06, T:0.42


Consensus pattern (16 bp):   
TTGCCCTCTACCTCTT
Done.