Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016310.1 Corchorus capsularis cultivar CVL-1 contig16331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18590

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1999--2046
17
2.8
17
83
0
51
37
18
20
22
1.94
3962--4122
48
3.4
48
78
8
132
36
23
16
22
1.94
4292--4321
2
15.0
2
92
0
51
46
0
0
53
1.00
5183--5343
48
3.4
48
78
8
132
36
23
16
22
1.94
5515--5546
2
16.0
2
93
0
55
46
0
0
53
1.00
7214--7427
96
2.2
96
79
8
222
41
19
17
21
1.91
7945--8021
38
2.0
38
87
5
111
33
22
18
25
1.96
7983--8079
49
2.0
49
86
6
135
37
24
16
21
1.94
8398--8616
47
4.6
46
76
3
150
40
21
16
22
1.91
8755--8921
46
3.6
46
80
12
148
35
26
20
17
1.94
10010--10132
46
2.6
47
83
2
149
34
23
16
25
1.95
10010--10146
46
2.9
45
81
6
148
36
22
14
26
1.93
10413--10452
21
1.9
21
89
0
62
15
42
10
32
1.79
10614--10642
11
2.7
11
94
5
51
13
6
0
79
0.93
11754--11815
11
4.7
14
69
27
55
32
1
9
56
1.41
11754--11821
26
2.6
26
86
9
102
33
1
10
54
1.43
11858--11883
10
2.6
10
100
0
52
38
0
30
30
1.58
11970--12013
21
2.1
21
86
0
61
34
9
38
18
1.82
13473--13569
47
2.0
48
92
2
160
17
17
17
47
1.83

Tables:   1

The End!