Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016318.1 Corchorus capsularis cultivar CVL-1 contig16339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1320
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31


Found at i:809 original size:5 final size:5

Alignment explanation


    Indices: 799--834  Score: 63
    Period size: 5  Copynumber: 7.0  Consensus size: 5

        789 CTGGTCGAAA

                                                      
        799 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTAT ATTTT
          1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT-T ATTTT

        835 TCGATATAAC


Statistics
Matches: 30,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   5   25  0.83
   6    5  0.17

ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78


Consensus pattern (5 bp):   
ATTTT

Found at i:930 original size:17 final size:17

Alignment explanation


    Indices: 908--941  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        898 GAATCGGCTA

                             
        908 TGAATTTTTGAAGTTTC
          1 TGAATTTTTGAAGTTTC

                        *    
        925 TGAATTTTTGAATTTTC
          1 TGAATTTTTGAAGTTTC

        942 AAGAAGGTGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.24, C:0.06, G:0.15, T:0.56


Consensus pattern (17 bp):   
TGAATTTTTGAAGTTTC
Done.